I'm glad you liked it. Well, near the end I started to really like the "bad guys" exactly fro that very reason - they weren't bad in stereotypic villainous way. For example that Captain - can't remember his name now - he had a very realistic personality and was in a realistic situation. He was in a battle that could only be described as massacre. But than he was saved by a doctor, who only cared of saving lives and not what uniform his patient was wearing. And than something snapped in his mind. So much like what happens with real people who go through things that don't make sense - like war for example.
The Emperor was doomed from the beginning. I agree that the only thing I felt for him was immense pity. And what about that brilliant performance by Furuya Toru! Damn, I really like that VA. He did narration and Emperor here. You might remember him for his narration in G00.
But overall that realism did make the whole show better in my opinion.
I honestly have no idea what happened. Ending was extremely confusing, though really good and satisfying.
No, I only checked out Omni's summaries. I didn't had enough time to get around to actually watch FMA.
On the other subject - I just found an interesting pic on the net:
http://kallen.stadtfeld.cc/img/660.jpg
That supposed to be the rumoured incident at Amoyamiya or whatever that place was called. I wonder witch Picture Drama is that from. Now I really want to check out all the R2 picture dramas that already came out and were translated. ^^