Yes, FMA and Nanoha have shape shifters. In FMA it happens like 5 times in total over 63 episodes and in Nanoha it's about the same number over all 3 seasons. You don't watch those shows for shape shifting but for other reasons.
That said I recommend Wolf's Rain (Humans -> wolves), Erementar Gerard (People -> weapons) and Claymore (Humans -> monsters).
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