Quote:
Originally Posted by sa547
He described the terrifying power of the atomic bomb, and it dawned upon me that Madoka possessed, in her final form, incalculable amount of power to change the universe, time and space, and rewrite all the rules of the game, and she unleashed this energy to destroy the final enemy, but at the cost of losing her corporeal existence.
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It think you're fan-wanking a bit. She didn't have the power to rewrite all the rules, or she would have done just that. Her power was her wish, witch was the one rule she added to the game, and then the universe rearranged itself to accommodate that rule (Kyubey tells this to Homura).
And her "final enemy", which was her witch form (aka herself) was destroyed by Madoka's own wish, which took the form of herself because she wished to erase the witches with "her own hands". This paradox (aka, Madoka destroying Madoka) was what erased her from the universe. She didn't just lose her "corporeal existence". Being "born" from the paradox that is to kill herself, she became a non-existent existence, a paradoxical being, a non-being, of you will.