I don't think this episode proved the Sybil System is bad. If we look at it from the stand point of justice, it might in fact be perfect. A collective consciousness of human beings that has expanded thought processes and abilities to assess information than greater than any human being can get closest to perfection as possible. It also continuously expands and evolves into a stronger system.
Makishima is an agent of chaos, he is not a champion of justice, but of free will itself.
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