Who knows?
The world hates Geass, and because they are isolated, it is very easy for them to crack under this pressure. They are cursed to use geass to accomplish basic tasks. They might think that its better for them to be accepted, thus starting a rebellion.
They might have other Code users backing them up out of a contract. C.C. and (The presumably alive) Lelouch are trying to stop their rebellion while trying to conceal their identies from the public. They fail to do so and the world is again plunged into disarray.
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