Ange's memories are explicitly unreliable. Battler brings this up in ep8 and I think it's a fair point; the last time she'd have probably even been there, she was five.
So the fact that Ange doesn't question Kanon doesn't mean much. It's everybody else, and especially people in the future, that raises a problem here. At best, we would have to assume Genji faked records for Kanon to suggest he was a Fukuin orphan... but then why didn't anybody who was a Fukuin graduate say "Wait, I never heard of anybody like that while I was there, and I grew up there around the same time?" Kanon simply did not exist until Yasu created him, and if Genji faked an identity for him, it couldn't also be Yasu's identity without throwing up enormous red flags to any Witch Hunter who isn't an idiot.
Which appears to be none of them.
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