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I recently upgraded to 1000 mb of RAM, 2 harddrives with 80 and 110 GBs of space with the second partitioned into two 55 GB disks...
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This might just be the problem. Your PC was originally a premade one, or did you build it from scratch? If it's a premade one, my bet is that they threw a crappy PSU at you, and now it can't handle the new hard drives.
Be careful. My experience indicates that random variations, in and out, of power can get as far as burning a HDD. I'd say you take a look at the PSU and tell us what brand is it and how much power capacity it can handle. Also, full PC specs should help, too.