Err... It has been explained in the Canon.
IS improve human's body, have hyper sensor and PIC
Which is why IS can do those stunts without the pilot being knocked out. Unlike conventional jet planes.
IS is also capable to transfer information into the pilot's head (which is why Queen virus(in my story) can infect humans too)
Edit Transfer information into pilot's head is probably why Ichika can pilot IS so well... it transfer basic information into the pilot's head but probably because humans' body can't comprehend all the information send, the information they received from the IS is incomplete and need lesson to fully understand...
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