Here's mine :
Sasha and Mafuyu (
Seikon no Qwaser) : The pairing happened because they ended up together at the end of season 1.
Naruto and Sakura (
Naruto) : They make an attempt to pair up each other, but failed
Issei and Rias (
High School DxD) : I heard in some random LN thread as well in Wiki
Tori and P-01s (
Horizon on the Middle of Nowhere) : They end up together in the first arc.
Shikamaru and Temari : I despise the fact that they end up together
. I wish Shikamaru would end up with Ino instead of Temari.